 |
Putative Orthologous Groups |
|
Putative Orthologous Groups |
POGs is a relational database that integrates data from rice, maize, and Arabidopsis by placing the complete Arabidopsis and rice proteomes, and the available maize sequences into "putative orthologous groups" (POGs). POGs were assigned using InParanoid.
Each POG entry includes cross-referenced orthologs and paralogs in Arabidopsis and rice, annotated with domain organization, gene models, phylogenetic trees showing closely-related proteins, and intracellular targeting predictions. The database can be queried to identify POGs with specific domain combinations and predicted intracellular locations.
|
Search(multiple terms in the same or different field will be linked with "AND".) |
UpdatesAnnotation Tool Now Available
A tool for community annotation is now available. We welcome your input about POG assignments, literature
citations, experimentally-verified protein function and localization, etc. To suggest annotations, click on
"Annotate" on the relevant POG page.
Most Recent Sequence Updates
|
Contact:
Nicholas Stiffler stiffler@molbio.uoregon.edu
Alice Barkan abarkan@molbio.uoregon.edu
The original method used for POG assignments and other features of the database are described in:
Walker, N., Stiffler, N. and Barkan, A. (2007) POGs/PlantRBP: a resource for comparative genomics in plants Nucleic Acids Res, 35, D852-D856.
Please cite this paper if you use this database in published work.
Links:
Photosynthetic Mutant Library (PML)
Plastid Proteome Database
Development of this database was funded by grant DBI-0421799 from the National Science Foundation Plant Genome Research Program.