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View FASTA Alignment

Accession / Links	Description	Experimental Data/Comments	References
Os03g39610.1	chlorophyll A-B binding protein, putative, expressed | RAP ID: Os03g0592500
AT2G05100.1	Symbols: LHCB2.3, LHCB2, LHCB2.1 | LHCB2.1 (Photosystem II light harvesting complex gene 2.1); chlorophyll binding	This protein has an experimentally established localization.	LHCB2.1 (Photosystem II light harvesting complex gene 2.1); chlorophyll binding , LHCII-2.1, thylakoid-integral, thylakoid membrane (sensu Viridiplantae) The Plastid Proteome Database
AT2G05070.1	Symbols: LHCB2, LHCB2.2 | LHCB2.2 (Photosystem II light harvesting complex gene 2.2); chlorophyll binding	This protein has an experimentally established localization.	LHCB2.2 (Photosystem II light harvesting complex gene 2.2); chlorophyll binding , LHCII-2.2, thylakoid-integral, thylakoid membrane (sensu Viridiplantae) The Plastid Proteome Database
AT3G27690.1	Symbols: LHCB2.3, LHCB2, LHCB2:4 | LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding	This protein has an experimentally established localization.	LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding , LHCII-2.3, thylakoid-integral, thylakoid membrane (sensu Viridiplantae) The Plastid Proteome Database
Os03g39610.2	chlorophyll A-B binding protein, putative, expressed | RAP ID: Os03g0592500
Os03g39610.3

Accession	Domain Map
Os03g39610.1
AT2G05100.1
AT2G05070.1
AT3G27690.1
Os03g39610.2
Os03g39610.3

View FASTA Alignment" Domains"

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Genes marked with an * are the pog members

Cladogram Phylogram  

Species	Accession	Localization	Reference / Evidence
Arabidopsis	AT2G05070.1	Plastid	LHCB2.2 (Photosystem II light harvesting complex gene 2.2); chlorophyll binding , LHCII-2.2, thylakoid-integral, thylakoid membrane (sensu Viridiplantae) The Plastid Proteome Database
Arabidopsis	AT2G05100.1	Plastid	LHCB2.1 (Photosystem II light harvesting complex gene 2.1); chlorophyll binding , LHCII-2.1, thylakoid-integral, thylakoid membrane (sensu Viridiplantae) The Plastid Proteome Database
Arabidopsis	AT3G27690.1	Plastid	LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding , LHCII-2.3, thylakoid-integral, thylakoid membrane (sensu Viridiplantae) The Plastid Proteome Database

Targeting Predictions

Accession	Prediction Tool	Plastid	Mitochondria	Signal Peptide	None / Other	Prediction		Prediction Tool	Nuclear	Prediction
Os03g39610.1	TargetP	0.651	0.285	0.030	0.265	plastid		PredictNLS	0	none
	Predotar	0.890	0.010	0.000	0.110	plastid		NucPred	0.01	none
AT2G05100.1	TargetP	0.919	0.088	0.061	0.098	plastid		PredictNLS	0	none
	Predotar	0.930	0.010	0.000	0.070	plastid		NucPred	0.02	none
AT2G05070.1	TargetP	0.801	0.074	0.087	0.154	plastid		PredictNLS	0	none
	Predotar	0.880	0.010	0.000	0.120	plastid		NucPred	0.02	none
AT3G27690.1	TargetP	0.882	0.080	0.037	0.233	plastid		PredictNLS	0	none
	Predotar	0.870	0.010	0.000	0.130	plastid		NucPred	0.02	none
Os03g39610.2	TargetP	0.030	0.634	0.026	0.744	none		PredictNLS	0	none
	Predotar	0.000	0.010	0.000	0.990	none		NucPred	0	none
Os03g39610.3	TargetP	0.680	0.256	0.033	0.252	plastid		PredictNLS	0	none
	Predotar	0.890	0.010	0.000	0.110	plastid		NucPred	0.16	none